ALEXA-Seq - ALternative EXpression Analysis | Tool name | ALEXA-Seq - ALternative EXpression Analysis |
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| URL | http://www.alexaplatform.org/alexa_seq/index.htm |
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| Important features | 1. ALEXA Seq (ALternative EXpression Analysis) is used for next generation paired end RNA sequencing.
2. It is used for quantifying RNA seq reads.
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| Citations | Griffith M, Griffith OL, Mwenifumbo J, Goya R, Morrissy AS, Morin RD, Corbett R, Tang MJ, Hou YC, Pugh TJ, Robertson G, Chittaranjan S, Ally A, Asano JK, Chan
SY, Li HI, McDonald H, Teague K, Zhao Y, Zeng T, Delaney A, Hirst M, Morin GB, Jones SJ, Tai IT, Marra MA. Alternative expression analysis by RNA sequencing. Nat Methods. 2010 Oct;7(10):843-7. Epub 2010 Sep 12. PubMed PMID: 20835245. |
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| Year of publication | 2010 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | RNA seq analysis |
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| Category | Free, Downloadable |
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| License | GPLv3 |
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| Operating system | Linux, Windows |
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| Operating language | Perl |
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